Talvicen · Tuberculosis WGS samples

About Talvicen

Talvicen turns raw sequencing data into interpretable results for bacterial pathogen genomics — quality control, lineage typing, and drug-resistance profiling, at population scale.

Our aim is to make large-scale genomic surveillance affordable and reproducible — so a research group, reference lab, or surveillance programme can analyse thousands of genomes without building and maintaining a bioinformatics stack of their own.

We're starting with tuberculosis — one of the world's deadliest infectious diseases — by processing the entire public INSDC catalogue of Mycobacterium tuberculosis whole-genome samples into a single, uniformly-analysed open reference. Once that run completes, the results here become a free public benchmark, and you'll be able to run your own isolates through the identical pipeline to compare against that global backdrop.

From reads to answers

Raw reads in; QC, lineage, and WHO resistance markers out — one reproducible pipeline.
A live public reference

Every public M. tuberculosis genome in INSDC, analysed the same way — and updated as new samples are published.
Your data, protected

For sensitive work, Talvicen runs your samples in a dedicated, data-protected environment — isolated from the public demo.
Free public API

A demo on public, non-sensitive data — coming when the reference run completes; no account.

Search any public INSDC whole-genome sample by BioSample accession to see its QC verdict, inferred lineage, and WHO drug-resistance markers. No account needed.

PreviewTalvicen is still processing its full reference dataset — this is an early preview showing the samples completed so far. Once processing is finished, we'll open a free public API so you can test our product, which will include identification of your sample's relatives in the INSDC corpus.

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One BioSample accession at a time. Default view: the 20 most recently processed.

Latest processed

BioSample	Lineage	Country	Collected	QC	Resistance